Visit the CIViC resource at civicdb.org.
Disclaimer: CIViC is intended for purely research purposes. It should not be used for emergencies or medical or professional advice.
CIViC by The McDonnell Genome Institute at Washington University School of Medicine is licensed under a Creative Commons Public Domain Dedication (CC0 1.0 Universal)
Comments¶
Encouraging a transparent curation process is one of the goals of the CIViC knowledgebase. To that end, it is possible (and encouraged) to record relevant curation details, motivations, and questions for other curators or editors in the form of comments on primary CIViC entities.
Each CIViC entity capable of accepting suggested changes also includes a comment thread. These comments can be viewed by clicking on an entity’s ‘Revisions’ tab, then hovering over the text bubble next to the specific revision..
Initial Comments¶
The forms for adding new evidence or assertions include a comment field, so that a curator can describe why the record should be included in CIViC. This comment will be displayed at the top of the comment thread. Note that this comment is not required so many records will not include an initial comment.
Creating and Previewing Comments¶
To create a comment, ensure you are logged in, navigate to the entity you wish to comment upon, click the entity’s Comment tab.
Above the comment area are two buttons, ‘Write’ and ‘Preview’, with Write being selected by default. Click Preview to see how your message will appear with all the formatting and links applied.
When you are satisfied with your comment, press ‘Add Comment’, and your message will be immediately appended to the entity’s comment thread.
Deleting Comments¶
You may delete your own comments by clicking the ‘Delete’ button at the bottom-right corner of its comments box. It is not possible to undo the deletion of a comment.
Comment Formatting¶
Emphasis, styling, images and links may be added to comments using a subset of Markdown syntax:
Effect
Syntax
Headers
Emphasis
Lists
Ordered Unordered
Images
Blockquotes
Inline code
I think you should use an `<addr>` element here instead.
Comment Macros¶
Using macros, you may easily insert links to CIViC entities, mention and notify users.
@username mention macro
‘@’ followed by a user’s display name will be displayed as a link to the user’s profile page, and generate a notification to the mentioned user. This is useful for calling a user’s attention to a particular comment.
Type ‘@’, and the first couple letters of a user’s name, and CIViC will show you a dropdown menu of users with matching display names. Hit enter to insert an user mention link, which will display in the rendered comment as a link to the user’s profile page, and generate a notification to the mentioned user.
@admins and @editors mention macros
Adding ‘@admin’ or ‘@editor’ to your message will generate a mention notification for all users with the admin or editor role, respectively:
#ENTITY link macro
‘#’ followed by an entity type abbreviation, and an entity ID will be displayed as a link to that entity’s summary view:
Use the following syntax for the target entity:
#MP123
Molecular Profile link
#V123
Variant link
#G123
Gene link
#E123
Evidence Item link
#VG123
Variant Group link
#R123
Revision link
hash (#) entity link suggestions macro
CIViC can inline substring searching for entity link macros. Enter an entity type as above, plus a colon, e.g.
#V:
. Then begin typing the name of the entity, or a substring. CIViC will display a dropdown of entities that contain matching text in their names. Select an entity, and the correct macro link with the ID will be entered into the comment.