Citations
=========

The following publications are directly related to the CIViC project.

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Project                         Organization            Title                                               Link(s)
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CIViC public proposal           WashU / Scripps         Organizing knowledge to enable personalization of   `PubMed: 25222080 <https://pubmed.ncbi.nlm.nih.gov/25222080/>`_ 
                                                        medicine in cancer                                   (2014. Genome Biology) 
CIViC original publication      WashU                   CIViC is a community knowledgebase for expert       `PubMed: 28138153 <https://pubmed.ncbi.nlm.nih.gov/28138153/>`_
                                                        crowdsourcing the clinical interpretation of         (2017. Nature Genetics)
                                                        variants in cancer
Standards for variant sharing   Multi-institution       ClinGen Cancer Somatic Working Group                `PubMed: 29218886 <https://pubmed.ncbi.nlm.nih.gov/29218886/>`_
                                initiative / ClinGen    standardizing and democratizing access to cancer     (2018. PSB)
                                Somatic Working Group   molecular diagnostic data to drive translational
                                                        research
Minimum variant level data      Multi-institution       Adapting crowdsourced clinical cancer curation in   `PubMed: 30311370 <https://pubmed.ncbi.nlm.nih.gov/30311370/>`_ 
                                initiative / ClinGen    CIViC to the ClinGen minimum variant level data      (2018. Human Mutation)
                                Somatic Working         community‐driven standards
                                Group
CIViC SOP                       WashU                   Standard operating procedure for curation and       `PubMed: 31779674 <https://pubmed.ncbi.nlm.nih.gov/31779674/>`_
                                                        clinical interpretation of variants in cancer        (2019. Genome Medicine)
CIViCmine                       Canada's Michael        Text-mining clinically relevant cancer biomarkers   `PubMed: 31796060 <https://pubmed.ncbi.nlm.nih.gov/31796060/>`_ 
                                Smith Genome            for curation into the CIViC database                 (2019. Genome Medicine)
                                Sciences Centre         
OpenCAP                         WashU                   Open-Sourced CIViC Annotation Pipeline to           `PubMed: 31618044 <https://pubmed.ncbi.nlm.nih.gov/31618044/>`_ 
                                                        Identify and Annotate Clinically Relevant Variants   (2019. JCO Clinical Cancer Informatics)
                                                        Using Single-Molecule Molecular Inversion Probes
CIViCpy                         WashU                   CIViCpy: a Python software development and          `PubMed: 32191543 <https://pubmed.ncbi.nlm.nih.gov/32191543/>`_           
                                                        analysis toolkit for the CIViC knowledgebase         (2020. JCO Clinical Cancer Informatics)
Virtual Molecular Tumor Board   Multi-institution       Collaborative, Multidisciplinary Evaluation of      `PubMed: 32644817 <https://pubmed.ncbi.nlm.nih.gov/32644817/>`_ 
                                initiative / GA4GH      Cancer Variants Through Virtual Molecular Tumor      (2020. JCO Clinical Cancer Informatics)
                                (VICC)                  Boards Informs Local Clinical Practices
Meta-knowledgebase              Multi-institution       A harmonized meta-knowledgebase of clinical         `PubMed: 32246132 <https://pubmed.ncbi.nlm.nih.gov/32246132/>`_ 
                                initiative / GA4GH      interpretations of somatic genomic variants in       (2020. Nature Genetics)
                                (VICC)                  cancer
CIViC community approach        Multi-institution       A community approach to the cancer variant          `PubMed: 35624339 <https://pubmed.ncbi.nlm.nih.gov/35624339/>`_
                                WashU / ClinGen /       interpretation bottleneck                            (2022. Nature Cancer)
                                GA4GH (VICC)
CIViC update 2022 (NAR)         Multi-institution       Evolution of the open-access CIViC knowledgebase    `PubMed: 36373660 <https://pubmed.ncbi.nlm.nih.gov/36373660/>`_
                                WashU / ClinGen /       is driven by the needs of the cancer variant         (2022. Nucleic Acids Research)
                                GA4GH (VICC)            interpretation community
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