Citations¶
The following publications are directly related to the CIViC project.
Project |
Organization |
Title |
Link(s) |
---|---|---|---|
CIViC public proposal |
WashU / Scripps |
Organizing knowledge to enable personalization of medicine in cancer |
|
CIViC original publication |
WashU |
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer |
|
Standards for variant sharing |
Multi-institution initiative / ClinGen Somatic Working Group |
ClinGen Cancer Somatic Working Group standardizing and democratizing access to cancer molecular diagnostic data to drive translational research |
|
Minimum variant level data |
Multi-institution initiative / ClinGen Somatic Working Group |
Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards |
|
CIViC SOP |
WashU |
Standard operating procedure for curation and clinical interpretation of variants in cancer |
|
CIViCmine |
Canada’s Michael Smith Genome Sciences Centre |
Text-mining clinically relevant cancer biomarkers for curation into the CIViC database |
|
OpenCAP |
WashU |
Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes |
|
CIViCpy |
WashU |
CIViCpy: a Python software development and analysis toolkit for the CIViC knowledgebase |
|
Virtual Molecular Tumor Board |
Multi-institution initiative / GA4GH (VICC) |
Collaborative, Multidisciplinary Evaluation of Cancer Variants Through Virtual Molecular Tumor Boards Informs Local Clinical Practices |
|
Meta-knowledgebase |
Multi-institution initiative / GA4GH (VICC) |
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer |
|
CIViC community approach |
Multi-institution WashU / ClinGen / GA4GH (VICC) |
A community approach to the cancer variant interpretation bottleneck |
|
CIViC update 2022 (NAR) |
Multi-institution WashU / ClinGen / GA4GH (VICC) |
Evolution of the open-access CIViC knowledgebase is driven by the needs of the cancer variant interpretation community |
|